Basic Information
VIS ID
TVIS44020769
Fusion event
HTLV-1-LOC105370310 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
90949642/90297388 (Hg38)
End
90949642/90297388 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370310
Nearest miRNA
hsa-mir-1297/Upstream/66111; hsa-mir-1267/Downstream/1053217;
Nearest TSS
ENST00000623511/Upstream/177669; ENST00000426840/Downstream/195899;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/933867, chr13-CpG: 49/Downstream/877607
Nearby gene
MIR622(+66111) ;
Upstream sequence
ATAATCTAAGGGCTTCCTGAGGTATAATGAGAAAGGCTTGAGCTATTATGAAAATTTAAAGTATTAGGTCACAAAATGTTGGCATTTGAAACATTAGCCA
Downstream sequence
CTTTCTATCCAGAAAGTTCATTACAAAGACATTTCAACACCAGTAAGGGGCTCAGTTCCTATGCCAGTCAGGGAACTCGAAAGGCAGTTCTTTCTTAAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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