Basic Information
VIS ID
TVIS44020772
Fusion event
HTLV-1-LOC105370313 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
91899187/91246933 (Hg38)
End
91899187/91246933 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370313
Nearest miRNA
hsa-mir-1297/Upstream/1015656; hsa-mir-1267/Downstream/103672;
Nearest TSS
ENST00000623511/Upstream/115526; ENST00000618596/Downstream/151674;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/71468, chr13-CpG: 252/Downstream/100354
Nearby gene
LINC00379(No orient, 35235)
Upstream sequence
ggtaggggtgATGATAGAGATTATTTTTCTATTTGTACTTAGAGAGTACAAAAATTCAAACAAACTGGTTTTGAAGGTACTCAAATTTTACCCAAAAACT
Downstream sequence
AATCCATAAATCATTGATCTGACGAAGAAAAGTATATGTAATTTTACTTGAAACCTTCATTTTATACTTCAATAAAAGATACTCTGATGTTTTGGGGGTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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