Basic Information
VIS ID
TVIS44020778
Fusion event
HTLV-1-GPC6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
93908837/93256584 (Hg38)
End
93908837/93256584 (Hg38)
Orient
+
Location type
Intronic
Target gene
GPC6
miRNAs that regulate target gene
hsa-mir-361-5p ; hsa-mir-1279 ; hsa-mir-483-5p ; hsa-mir-32-3p ; hsa-mir-7161-5p ; hsa-mir-548u
Nearest miRNA
hsa-mir-1297/Upstream/766364; hsa-mir-1267/Downstream/3170645;
Nearest TSS
ENST00000623511/Upstream/29267; ENST00000617456/Downstream/579560;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/27960, chr13-CpG: 59/Downstream/1292722
Upstream sequence
agtcttcccttagtctgtaaactctgaaaggcaggatcaggtctcatttatcctggcatagccctcagtgcctggctcaGATAAGAAATTTAGTACACAT
Downstream sequence
ATAATGAACAATCAAATGGTGACAATGACCTAGGCTTTCATTTGATTCCTAGAAAACAACCTCTATGTAGATGTTGACTAAGTCCTGTATGTTCTCTGTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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