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Viral Integration Site DataBase
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TVIS44020803
Basic Information
VIS ID
TVIS44020803
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
21076322/20608163 (Hg38)
End
21076322/20608163 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1185-1/Downstream/415151;
Nearest TSS
ENST00000550708/Upstream/17340;
ENST00000336811/Downstream/1632;
Nearest CpG islands
None/Target,
chr14-CpG: 35/Upstream/146856
,
chr14-CpG: 28/Downstream/1553
Nearby gene
LOC254028
(No orient, 942)
Upstream sequence
AACTAGGGAAGATCAAGTACCAGCTAGAAGGGGGTGATTCTGAGGAATGCAGAGTAGGACACAGGGTTCTTACGGAGTTACCCCGCCCTGCATGGTCTCC
Downstream sequence
AGCTGTGTCTTGTAGAGGAACTTAGTAGCATATTAGCTCCCAGGGCAATTCCAGTGACATCTTGGGAGCTTTTTTTCTGAAAAATAACCACTCCTAggct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#2
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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