Basic Information
VIS ID
TVIS44020809
Fusion event
HTLV-1-LINC00596 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
24354492/23885283 (Hg38)
End
24354492/23885283 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00596
Nearest miRNA
hsa-mir-208a/Upstream/467220; hsa-mir-1185-1/Downstream/258206;
Nearest TSS
ENST00000550708/Upstream/242238; ENST00000543741/Downstream/49285;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/307565, chr14-CpG: 32/Downstream/68278
Nearby gene
DHRS4-AS1(No orient, 53448)
Upstream sequence
caaattgccttcccaaaggttgcaacaatacaaaatctcatcaaaaaatctgaaagtacctattgctccatactttttccagctctagatagtataaagg
Downstream sequence
ttttttaaattttttaccaatctataagttgaaagattctatcttactgatgtttttatctccatattttaaatacgtgcaagactaagtatatttccat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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