Basic Information
VIS ID
TVIS44020819
Fusion event
HTLV-1-LINC02327 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
29304341/28835135 (Hg38)
End
29304341/28835135 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02327
Nearest miRNA
hsa-mir-208a/Upstream/1201857; hsa-mir-1185-1/Downstream/2179511;
Nearest TSS
ENST00000550708/Upstream/4690; ENST00000550990/Downstream/96435;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/49272, chr14-CpG: 147/Downstream/1091869
Nearby gene
LINC01551(No orient, 40341)
Upstream sequence
tataatgactatatagactaaaaacccATCTTGGTCACTAACAGTTTCCACCTTCCGGTCTAATGCAAGGGGCTCAGCAGAGTGTAAAGCAGCATAACAT
Downstream sequence
GTTTATTTAAATATTATGAGAATAAATAGGATTGCGGCCAAATACATTTATTGTCAGACTGACTATttcaatggcttctgtttctatttagaacaaaaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate