Basic Information
VIS ID
TVIS44020897
Fusion event
HTLV-1-LINC01467 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
82079974/81613630 (Hg38)
End
82079974/81613630 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LINC01467
Nearest miRNA
hsa-mir-1260a/Upstream/4347340; hsa-mir-1185-1/Downstream/12334596;
Nearest TSS
ENST00000550708/Upstream/79769; ENST00000554814/Downstream/9431;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/79540, chr14-CpG: 45/Downstream/3916520
Upstream sequence
gggggaactgcccccatgatctaatcaccttccaccaagtccctccctcaacacctggggattacaattccagataagatttgggtgccaaacacagagc
Downstream sequence
caaaccatatcaccccccagtgagatacagaagcttatacatcattttaagtttacagaaagaatgtgtactcagggcatggccaagaacaagttatgaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate