Basic Information
VIS ID
TVIS44020901
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
86402211/85935867 (Hg38)
End
86402211/85935867 (Hg38)
Orient
+
Location type
ncRNA_intronic
Nearest miRNA
hsa-mir-1260a/Upstream/8669577; hsa-mir-1185-1/Downstream/8012359;
Nearest TSS
ENST00000550708/Upstream/1157; ENST00000554647/Downstream/48079;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/401733, chr14-CpG: 87/Downstream/2056685
Upstream sequence
ctaggcaatctcttgtgcttcacctactcaaatctgtgtctgtgaacctctagaaaccactgatATCtttattttctttattttttcatttttagagaca
Downstream sequence
gggtcttgcttcgtttcccagtctggagtgcagtggcaccatatatatggctcactgccacctttacttcctgggctcaaaggatcctcctgcctcagcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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