Basic Information
VIS ID
TVIS44020907
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.12
Reference genome
GRCh37/hg19
Start
92506646/92040302 (Hg38)
End
92506646/92040302 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/14774012; hsa-mir-1185-1/Downstream/1907924;
Nearest TSS
ENST00000550708/Upstream/243; ENST00000553427/Downstream/594;
Nearest CpG islands
chr14-CpG: 71/Target, None/Upstream, None/Downstream
Nearby gene
TRIP11(-243) ;
Upstream sequence
GGCGGCCAGCTTCGGCCGGGGAAGGAATGGCCTGGATAACTGGGGCATCGCGGCGCTCCTCGGCCTCCTGCAGCTGCGTTTCAAAGCAGAGCCGACCCTT
Downstream sequence
GGTGGGTAGTCCGGGGACCCTGCGGACCCTCCTTGTGTTGTTGAAACCTAGTGTTTTAATTGGGACTACACCCAGCAGTGCCGGGAGACTTGGCGGGGAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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