Basic Information
VIS ID
TVIS44020914
Fusion event
HTLV-1-LOC105370655 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98589390/98123053 (Hg38)
End
98589390/98123053 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105370655
Nearest miRNA
hsa-mir-1260a/Upstream/2985067; hsa-mir-1185-1/Downstream/1986366;
Nearest TSS
ENST00000550708/Upstream/144929; ENST00000557072/Downstream/13021;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/903444, chr14-CpG: 53/Downstream/995015
Nearby gene
LINC01550(No orient, 144929)
Upstream sequence
tacattaccctatggatatcatgcaggactttttgacattttcaacaatgtctttgcaccatagaggacagaataagaaaacaaaaacagtgagtaatgc
Downstream sequence
acataggtctgggccccatgtggggcatggcggggaacctgcccttggcacatccagcctgtacacatgccgttttattactatttgtgtgcgtgtttgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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