Basic Information
VIS ID
TVIS44020923
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
GRCh37/hg19
Start
25884034/25638887 (Hg38)
End
25884034/25638887 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1268a/Upstream/2076756; hsa-mir-10393/Downstream/209860;
Nearest TSS
ENST00000557528/Upstream/60096; ENST00000557558/Downstream/45148;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/41886, chr15-CpG: 28/Downstream/74843
Nearby gene
ATP10A(-39826) ;
Upstream sequence
tactccaatgttatgatcacttaacaaaactcgatttctcaagccagtttaattatagcgcctgacgaaattcaaactactactccttactcctacttag
Downstream sequence
ggaccttagtaaatgacactacaataatagtgccacagaaagtaactatatgtagggatcaactaaaaacactgaatgactgtcaaaaattactagggaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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