Basic Information
VIS ID
TVIS44020927
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q12
Reference genome
GRCh37/hg19
Start
27076922/26831775 (Hg38)
End
27076922/26831775 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1268a/Upstream/982950; hsa-mir-10393/Downstream/1594716;
Nearest TSS
ENST00000557528/Upstream/15369; ENST00000555060/Downstream/34588;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/57902, chr15-CpG: 17/Downstream/7070
Nearby gene
GABRA5(+34944) ;
Upstream sequence
agcccaggcagaggaggcgccgagagcgagcgacggctatgaggactgccaacccgctgtcacctctcagcaggaaaacaagcttggggctcccattgat
Downstream sequence
tctacgttatggtgagctgtataattattccattactacaaggtaataataatataaataaagtgcacaataactgtaatgtgcttgaatcctcctgaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate