Basic Information
VIS ID
TVIS44020935
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
37126631/36834430 (Hg38)
End
37126631/36834430 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/907507; hsa-mir-10393/Downstream/138391;
Nearest TSS
ENST00000557528/Upstream/78485; ENST00000559509/Downstream/60848;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/15853, chr15-CpG: 47/Downstream/45842
Nearby gene
CSNK1A1P1(-15924) ;
Upstream sequence
gtcagatcaagttttacaaccaaattagatgtttctaaaaattggaggttttcagagctttctggatttcaaaactatggataagggaattgtagaGTAT
Downstream sequence
ACTTTTTCCTGAAGTTCGCAAAGTCATGAAAGCTAAGCAAATCTAAGTTAGGCCAACAGTAAAACATACAGGGTAATTCTACTATAATCTACAACCTACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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