Basic Information
VIS ID
TVIS44020939
Fusion event
HTLV-1-LINC02694 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
38989896/38697695 (Hg38)
End
38989896/38697695 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02694
Nearest miRNA
hsa-mir-1233-1/Upstream/1724794; hsa-mir-10393/Downstream/2993890;
Nearest TSS
ENST00000557528/Upstream/1097; ENST00000645416/Downstream/5178;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/132238, chr15-CpG: 109/Downstream/882631
Upstream sequence
ggaacgctgtcctgccgagacgttgattttagtcctatgagacccataggacttctggcccatagaactaaatgatagtgtgtgttttaagctgctaaag
Downstream sequence
ttttggtaatttattatagtagcaaCCGATAATAGAAATGGCTATAAAATGGAATGTATTTTGTAACTGAACATAATTTTCTTGCCTCTGGTGTCCCTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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