Basic Information
VIS ID
TVIS44020998
Fusion event
HTLV-1-LOC105370982 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
93961587/93418358 (Hg38)
End
93961587/93418358 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105370982
Nearest miRNA
hsa-mir-10393/Upstream/513883; hsa-mir-1302-10/Downstream/2914903;
Nearest TSS
ENST00000557528/Upstream/105152; ENST00000554318/Downstream/4218;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/308538, chr15-CpG: 27/Downstream/14166
Nearby gene
RGMA(-329144) ;
Upstream sequence
TGAACTCATCCAAAAAGGGTAACTTCTTCCAGGCCATTTCATTCTGCCTCTACTTCCCCATACCATTCCTGCCCCACCTGCAACTGCCAAATAGCGGCTC
Downstream sequence
CATCAATGACCTGGTTCCTGGGATGCCCTGGACCGGGAGATTGTTTCAGAGTTGGGTGGTCAGGGAGCCATGATGGGCCCAGAAAGACAGTAGAGAGCCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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