Basic Information
VIS ID
TVIS44021043
Fusion event
HTLV-1-LINC02137 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
58487968/58454064 (Hg38)
End
58487968/58454064 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC02137
Nearest miRNA
hsa-mir-1225/Upstream/681712; hsa-mir-11401/Downstream/8748257;
Nearest TSS
ENST00000527434/Upstream/32703; ENST00000566041/Downstream/8782;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/61103, chr16-CpG: 192/Downstream/9065
Nearby gene
NDRG4(+9581) ;
Upstream sequence
aggctgcatgctttccttggctttgtggccctttctctatcttcaaatccagcaacactgtcaagccacatccttctcacactgccatttctttggttcc
Downstream sequence
ctcctgcctccctcttccacttttgatgacccccgtgattaccttggacccacctagataatccaggatcatgtccctattttaaagtcagctgattagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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