Basic Information
VIS ID
TVIS44021061
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
66069377/66035474 (Hg38)
End
66069377/66035474 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/8263122; hsa-mir-11401/Downstream/1166847;
Nearest TSS
ENST00000527434/Upstream/171690; ENST00000568023/Downstream/331148;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/911713, chr16-CpG: 40/Downstream/234908
Nearby gene
CDH5(+331133) ;
Nearest cancer related gene
CDH5(TSG, +331133) ;
Upstream sequence
tctcaggcatgtggtaagaatgatcttcccacctcctgggagctgagtgtggccatgagacttgctttgacctaagaaatgaaaactttaaggaccaatg
Downstream sequence
catttttttttccatttggcatggcaaacagcaaagtttcagattgtgtctgctccatcatcctgggttcctaaataaggaaaatgagaagaaaaacgca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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