Basic Information
VIS ID
TVIS44021116
Fusion event
HTLV-1-LOC105371589 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
21418058/21514798 (Hg38)
End
21418058/21514798 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371589
Nearest miRNA
hsa-mir-1180/Upstream/2170224; hsa-mir-10226/Downstream/5779112;
Nearest TSS
ENST00000595228/Upstream/54583; ENST00000584594/Downstream/4716;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1555, chr17-CpG: 51/Downstream/36327
Upstream sequence
caaccatggagacagtaagaagagcagtggttggcaggggttgggggagagagggatgaacaggcagagcacaggggatttgccggactgtgaaactact
Downstream sequence
ctgtatgatatgacagtggtggatatggcattagacatctgttcaaacccacagaatgtactgaggactaaactgacattttttctctcttgcccaaatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate