Basic Information
VIS ID
TVIS44021126
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
29712906/31385888 (Hg38)
End
29712906/31385888 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/291463; hsa-mir-10226/Downstream/148995;
Nearest TSS
ENST00000595228/Upstream/5747; ENST00000581280/Downstream/5736;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/40294, chr17-CpG: 118/Downstream/5324
Nearby gene
RAB11FIP4(+5736) ;
Upstream sequence
ggcagagggaacagcatatgcaaggCAAGCCAGGCATTTCACTGATCAATTCCATGTTGAGTCACTGTCTTGGAGTCTATGCCACacaatgcctgggata
Downstream sequence
tagtaagtgctcaataaatgtAAACTGAGTATAGTAGATGATGTTACTGCCCAGCCATGTTTTACAGAATGGAGAGCATCAGGCTGTAAAGGGCCTTCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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