VISDB Viral Integration Site DataBase

VIS ID

TVIS44021132

Fusion event

HTLV-1-SRCIN1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

q12

Reference genome

Start

End

36693810/38537575 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-542-5p ; hsa-mir-374a-5p ; hsa-mir-150-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4283 ; hsa-mir-3191-3p ; hsa-mir-4437 ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-92b-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-4749-5p ; hsa-mir-4706 ; hsa-mir-3664-3p ; hsa-mir-6895-5p ; hsa-mir-873-5p ; hsa-mir-4781-5p ; hsa-mir-6834-5p ; hsa-mir-486-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-744-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-6875-5p ; hsa-mir-4419a ; hsa-mir-3126-5p ; hsa-mir-6775-5p ; hsa-mir-5090 ; hsa-mir-3937 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-665 ; hsa-mir-6823-5p ; hsa-mir-4459 ; hsa-mir-4779 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-3180-5p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-1290 ; hsa-mir-877-3p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-2116-3p ; hsa-mir-1914-3p ; hsa-mir-532-3p ; hsa-mir-6746-5p ; hsa-mir-4301 ; hsa-mir-1273g-3p ; hsa-mir-346

Nearest miRNA

hsa-mir-1180/Upstream/922536; hsa-mir-10226/Downstream/164687;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/26577, chr17-CpG: 42/Downstream/20597

Upstream sequence

gagtaagaccctatctcaaaaataataataataagactgggctctgtggctcatgcctgtaatcccagcactttgggaggccgaggcgggcggatcatga

Downstream sequence

ggtcaggagatcgagaccatcctggctaacagggtgaaaccctgtctctactaaaaatacgaaaaatgagccaggcgtggtggcgggcacctgtaatccc