Basic Information
VIS ID
TVIS44021145
Fusion event
HTLV-1-LINC01982 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
50543831/52466471 (Hg38)
End
50543831/52466471 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01982
Nearest miRNA
hsa-mir-10226/Upstream/1697741; hsa-mir-1250/Downstream/4424799;
Nearest TSS
ENST00000595228/Upstream/75956; ENST00000412360/Downstream/395650;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/307597, chr17-CpG: 17/Downstream/1290818
Nearby gene
CA10(-306454) ;
Upstream sequence
tggactatggaatttgagttaatgctgaaatgagttaagactttggaggactgttggcaaggcacgattggttttgaaatgtgaggacatgagatttgga
Downstream sequence
ggggtcagggttggaaTCatatggtttggctgtgtccccaccaaaatctcaacttgacttgtttctcccagaattcccatgagttgtgggacggacctgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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