VISDB Viral Integration Site DataBase

VIS ID

TVIS44021155

Fusion event

HTLV-1-PITPNM3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr17

Cytoband

p13.2

Reference genome

Start

End

6359666/6456346 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-6742-3p ; hsa-mir-4646-3p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-4433b-5p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-7150 ; hsa-mir-6793-5p ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6799-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-4722-5p ; hsa-mir-6134 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4768-3p ; hsa-mir-4419a ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-6873-5p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-5189-3p ; hsa-mir-339-3p ; hsa-mir-6888-3p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6740-3p ; hsa-mir-3670 ; hsa-mir-3120-5p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-556-5p ; hsa-mir-6741-3p ; hsa-mir-6867-3p ; hsa-mir-642a-5p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-7152-5p ; hsa-mir-511-5p ; hsa-mir-5001-3p ; hsa-mir-6830-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-6728-3p ; hsa-mir-3667-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-6847-3p ; hsa-mir-6747-3p ; hsa-mir-629-3p ; hsa-mir-4713-5p ; hsa-mir-183-5p ; hsa-mir-4707-3p ; hsa-mir-593-5p ; hsa-mir-6771-3p ; hsa-mir-7108-3p

Nearest miRNA

hsa-mir-1253/Upstream/1486196; hsa-mir-10226/Downstream/199094;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/711, chr17-CpG: 109/Downstream/99463

Upstream sequence

accctgggctcaagcaatcctgcgtatcaaagcaccaggattacaggcatgagccagggtgcttggccTCTGGATTCTTGAGGGTGGGGAAGCGCCCATC

Downstream sequence

CTTGTCACTTGGCTCACTAGAATCCTGCAAAGTCCCTCCCGTCACGCAGCCTCACCATGCCTCTTGTCATTTTTCTGAGCCCTGCGACTGCCCTCCTTGC