Basic Information
VIS ID
TVIS44021199
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
23999785/26419821 (Hg38)
End
23999785/26419821 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/2098075; hsa-mir-122/Downstream/171646;
Nearest TSS
ENST00000575820/Upstream/192938; ENST00000578367/Downstream/3174;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/192692, chr18-CpG: 348/Downstream/126995
Nearby gene
LINC01543(No orient, 3174)
Upstream sequence
GAACTGCACCAGGCAAGcagcttcccaggccagcagcccgtacagtgacaccgggccccccatcagcaccctgcacttggtttaatgctctcatgttgcc
Downstream sequence
gctgtgacattctgaacactttttgaacaaggggaccttcgctttcattttgctctagaccccatgaatggcgtagctggtcctgCTCTGCTGGTTCCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate