Basic Information
VIS ID
TVIS44021210
Fusion event
HTLV-1-LOC101927044 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
3244466/3244468 (Hg38)
End
3244466/3244468 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101927044
Nearest miRNA
hsa-mir-8078/Upstream/3132129; hsa-mir-1-2/Downstream/640885;
Nearest TSS
ENST00000575820/Upstream/24360; ENST00000608786/Downstream/2618;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/176933, chr18-CpG: 79/Downstream/2827
Nearby gene
MYL12A(+3014) ;
Upstream sequence
ttcatatgttgaaggcctaacccccagtgtgactgtatctggagatataattaaaatataattaaggttaaatgaagtcataacggtcggccctaattcc
Downstream sequence
attaacactgaaggctcataagaggaagagatcccagccatttgggaggcacagacgggcagatcacttgatgtcaggagtttgagaccagcctggccaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate