Basic Information
VIS ID
TVIS44021251
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
5716938/5716939 (Hg38)
End
5716938/5716939 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-6718/Upstream/1831507; hsa-mir-1-2/Downstream/123756;
Nearest TSS
ENST00000575820/Upstream/86239; ENST00000580378/Downstream/31880;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/86153, chr18-CpG: 131/Downstream/173354
Nearby gene
MIR3976HG(No orient, 31880)
Upstream sequence
TTAAAGGCCTATTGCAATTTGTTACCCAAAACAGCTACTAGCAGAAAGGAAAGAAAATGATTTACTGATTATTGTCTGTATCCCAGGcaaggttgttata
Downstream sequence
tacagttgtagaggctgtgcactgcacaaccctTCATCACCATGAAGGGCACTCTTCTTATCCTAGCCTGATATAGTGCAATGTGGTAGTCTTGgtatca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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