Basic Information
VIS ID
TVIS44021261
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.31
Reference genome
GRCh37/hg19
Start
6487441/6487442 (Hg38)
End
6487441/6487442 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3976/Upstream/113017; hsa-mir-1-2/Downstream/4272142;
Nearest TSS
ENST00000575820/Upstream/72205; ENST00000582033/Downstream/5978;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/72322, chr18-CpG: 63/Downstream/242161
Nearby gene
LINC01387(No orient, 23974)
Upstream sequence
CCTGAGTATCTCCTTAGCAACAGATGCAATTCACCTTGCAACAAATCCTACCATAGAACGAAGGAAACATCGTACTAAAGCAGAGAAATTTAGCACACAA
Downstream sequence
ATCATTGTGTTTCAGTAGGGTGCATAGAGAGATTACAGACAATGAAGTTTAAGGCAGTGGTTCTCAACTTTTTCCCCTCGCCCACATCTCTCTAGGATGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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