Basic Information
VIS ID
TVIS44021269
Fusion event
HTLV-1-LOC102725148 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
69478131/71810895 (Hg38)
End
69478131/71810895 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC102725148
Nearest miRNA
hsa-mir-1-2/Upstream/4729209; hsa-mir-548av/Downstream/1042426;
Nearest TSS
ENST00000575820/Upstream/22767; ENST00000563639/Downstream/26144;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1380035, chr18-CpG: 225/Downstream/730844
Upstream sequence
ctgtccctggctgcctatctgtaagtatcaaacttgctttgcataacatgcttcattttatgtgtgtgttctgtctcacaggactcagacaaataggtaa
Downstream sequence
gcagtgcaaggaggacctaaacagtagtcaagaatacagttggcataagtgcatggattcttgttcctgctggttggcataataatgacctttgctattc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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