VISDB Viral Integration Site DataBase

VIS ID

TVIS44021273

Fusion event

HTLV-1-ZNF516 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr18

Cytoband

q23

Reference genome

Start

End

74123855/76411899 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-432-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-6739-3p ; hsa-mir-4677-5p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-489-3p ; hsa-mir-4256 ; hsa-mir-3913-3p ; hsa-mir-6719-3p ; hsa-mir-4526 ; hsa-mir-3660 ; hsa-mir-6730-3p ; hsa-mir-4286 ; hsa-mir-6729-3p ; hsa-mir-2114-5p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-1306-5p ; hsa-mir-4699-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-1266-5p ; hsa-mir-1296-3p ; hsa-mir-1908-5p ; hsa-mir-211-3p ; hsa-mir-24-3p ; hsa-mir-3144-5p ; hsa-mir-3179 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3191-3p ; hsa-mir-3196 ; hsa-mir-3202 ; hsa-mir-3612 ; hsa-mir-3934-3p ; hsa-mir-4270 ; hsa-mir-4284 ; hsa-mir-4441 ; hsa-mir-4481 ; hsa-mir-4518 ; hsa-mir-4652-5p ; hsa-mir-4706 ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4749-5p ; hsa-mir-491-5p ; hsa-mir-5196-5p ; hsa-mir-524-3p ; hsa-mir-525-3p ; hsa-mir-650 ; hsa-mir-663a ; hsa-mir-6754-5p ; hsa-mir-6777-5p ; hsa-mir-6787-5p ; hsa-mir-6797-5p ; hsa-mir-6810-5p ; hsa-mir-6816-5p ; hsa-mir-6825-5p ; hsa-mir-6889-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-1-2/Upstream/3558517;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/9064, chr18-CpG: 179/Downstream/29384

Upstream sequence

TGCACTCAGGCAGTGGGGAGACAGTGCCTGAAAACGTGTACCACCCCTCCAGCATAAAGCAGTTTTTAAAATATTTAAAATACCACTTTTTATTATCACA

Downstream sequence

TACTTAGATAAGAAAACTAGCAAAGCACATAGGTCATCTTAACCTTAAAATACTCTTAAAATAAAAACATCTGAACATTCAAAGGAGTCAACCCGAGATG