Basic Information
VIS ID
TVIS44021287
Fusion event
HTLV-1-ZNF433-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
12113472/12002657 (Hg38)
End
12113472/12002657 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ZNF433-AS1
Nearest miRNA
hsa-mir-1181/Upstream/507035; hsa-let-7e/Downstream/700944;
Nearest TSS
ENST00000633603/Upstream/25835; ENST00000550826/Downstream/16020;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/14522, chr19-CpG: 55/Downstream/32558
Nearby gene
ZNF433(-12060) ;
Upstream sequence
tttttttgagatggagtcttgctctgtcgctcaggctggagtgcgatggcccaatctcgatctcctgaccctgttgatctgcctgccttggcctcccaaa
Downstream sequence
gtgccggattacaggcgtgagccatcgcgcctggctgccacatttatttattcttaACACATTTTATCTAAAATCCTATATTTCAGTGTGACATAAActg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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