Basic Information
VIS ID
TVIS44021303
Fusion event
HTLV-1-LOC105372345 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
28173845/27682937 (Hg38)
End
28173845/27682937 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105372345
Nearest miRNA
hsa-mir-10395/Upstream/7283583; hsa-let-7e/Downstream/7439763;
Nearest TSS
ENST00000633603/Upstream/36454; ENST00000588318/Downstream/63293;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3710980, chr19-CpG: 42/Downstream/110683
Upstream sequence
ttctcaatgagctcagaaatgttttttcatagattctacagagagagtgtttccaacatgttgaatcaaaacaatggtttaactttgtgagataaaccca
Downstream sequence
cacatcacaaagcattttcacacatagctggtttccagcgtttgttcaagaaattcagtttttcactgtaggccacaatgggctcagatatgtctctttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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