Basic Information
VIS ID
TVIS44021310
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q12
Reference genome
GRCh37/hg19
Start
30658322/30167415 (Hg38)
End
30658322/30167415 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/9768061; hsa-let-7e/Downstream/4955285;
Nearest TSS
ENST00000633603/Upstream/137499; ENST00000590564/Downstream/60875;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/224457, chr19-CpG: 51/Downstream/55086
Nearby gene
URI1(No orient, 150803)
Nearest cancer related gene
URI1(OG, No orient, 150803)
Upstream sequence
ATCGATGATACTTGGTCAGCTTGAGGCCTGGTCCCCCGGGCTGGGCCCTGTTAGGAAGAGAGATAGCTAGAGTGTCCCTGCCCACTGCAGGGTGGGGTTG
Downstream sequence
GAGCCAAGTAGAACAAGCATTTGTTTGCTGTTGGTTTCCTTTGTCTATGAAGCAGCCCTGAGCTGGAACGGTTACAGTGGGGTGTAGACAAATGGGGACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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