Basic Information
VIS ID
TVIS44021315
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
35045676/34554771 (Hg38)
End
35045676/34554771 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/14155417; hsa-let-7e/Downstream/567929;
Nearest TSS
ENST00000633603/Upstream/72243; ENST00000512455/Downstream/22689;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/56725, chr19-CpG: 43/Downstream/22730
Nearby gene
SCGB1B2P(No orient, 21962)
Upstream sequence
ccagagtaggtggccaaagttacacatgtccagtcagggcagaaaaactggtaagaatcttgacaactagagttagggtgatttccaggacagaggtaaa
Downstream sequence
agtcaacattctgaagtcctttttctgcacctttggagtttccacatccagtctggcttctggagtgtccaaattccacagcaaagtcgacgatacctgc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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