Basic Information
VIS ID
TVIS44021390
Fusion event
HTLV-1-LOC101927200 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
42430946/43802306 (Hg38)
End
42430946/43802306 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927200
Nearest miRNA
hsa-mir-103a-2/Upstream/2633228; hsa-mir-1-1/Downstream/605814;
Nearest TSS
ENST00000382410/Upstream/75308; ENST00000428529/Downstream/92414;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/134626, chr20-CpG: 209/Downstream/112151
Nearby gene
GTSF1L(-75304) ;
Upstream sequence
tgatggacatttgtgtggtttccagtgtgaggctattaggtataaactgccacgaacattcccatgtagttgtgtctgtggacaGGCCGTGCTTCAGTTT
Downstream sequence
TGACAGTCCAGGTGATAGTGGAACTTTCATCTCTTCAGCTTTCACTCCTAAAGACTTTCTAAAAATACCCTCATTTGCTCTCTCTCTACAGATGGGTGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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