VISDB Viral Integration Site DataBase

VIS ID

TVIS44021396

Fusion event

HTLV-1-PTGIS integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr20

Cytoband

q13.13

Reference genome

Start

End

48159341/49542804 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-496 ; hsa-mir-6867-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-1273d ; hsa-mir-642a-5p ; hsa-mir-627-3p ; hsa-mir-4508 ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-7977 ; hsa-mir-3178 ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-4486 ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-1228-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-6775-5p ; hsa-mir-5090 ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6784-5p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-4742-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4684-5p ; hsa-mir-3675-3p ; hsa-mir-605-5p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-2110 ; hsa-mir-340-3p ; hsa-mir-4271 ; hsa-mir-4293 ; hsa-mir-4725-3p ; hsa-mir-4786-5p ; hsa-mir-6771-3p ; hsa-mir-6780b-5p ; hsa-mir-6827-3p ; hsa-mir-6849-3p

Nearest miRNA

hsa-mir-103a-2/Upstream/2375746; hsa-mir-1-1/Downstream/321055;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/58319, chr20-CpG: 57/Downstream/24852

Upstream sequence

CCAATTACAGCCCTTGACACTGTTTGCACCACCCCAGGGCAAAACAAAAAGAATGGGGACTGTTCGTGTGCTGAGAGCTgtggctgagagtgcagactct

Downstream sequence

gggaccagccctgtcctgaccccaacacaggcctctgggcaaatgactcaggctctccaggtctcagttttctcatctgtcaaatggaatatgtaaagtc