Basic Information
VIS ID
TVIS44021455
Fusion event
HTLV-1-LINC00310 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q22.11
Reference genome
GRCh37/hg19
Start
35562211/34189910 (Hg38)
End
35562211/34189910 (Hg38)
Orient
-
Location type
ncRNA_exonic
Target gene
LINC00310
Nearest miRNA
hsa-let-7c/Upstream/639182; hsa-mir-3197/Downstream/1530805;
Nearest TSS
ENST00000624081/Upstream/4044; ENST00000427022/Downstream/15145;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/115805, chr21-CpG: 29/Downstream/12112
Upstream sequence
ttgtgaagaaggtgtcttgcttcccctttgccctcctccatgattgtaagtttcctgaggcctccccagtcatgcagaactgtgagtcaattaaacctct
Downstream sequence
gtcctttataaattacccagtctcaggcggttctttataccagtgtgagaatggactaatacaAACCCTAatacatcaatttcttttttgatctaccagg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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