Basic Information
VIS ID
TVIS44021476
Fusion event
HTLV-1-TEKT4P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
9920326/9081493 (Hg38)
End
9920326/9081493 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
TEKT4P2
Nearest miRNA
hsa-mir-10396a/Upstream/93828; hsa-let-7c/Downstream/4324891;
Nearest TSS
ENST00000624081/Upstream/62823; ENST00000624052/Downstream/243520;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/7915, chr21-CpG: 24/Downstream/2155
Upstream sequence
tcaattgttttgatttttagatcccacaaataagtgagaacatgcaatgtctgcctttccgtgcttggcttatttcccttaacataatgatatccagttc
Downstream sequence
cttccatgttgttgcaaatgactgaatctcattcttttttagggctgaataatactccactgtgtgtatctaccacattttctttaatacattaatctgt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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