Basic Information
VIS ID
TVIS44021553
Fusion event
HTLV-1-LOC112268302 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q24
Reference genome
GRCh37/hg19
Start
120447598/121313744 (Hg38)
End
120447598/121313744 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112268302
Nearest miRNA
hsa-let-7f-2/Upstream/1666896; hsa-mir-105-1/Downstream/57228;
Nearest TSS
ENST00000429181/Upstream/266156; ENST00000569460/Downstream/558125;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/265628, chrX-CpG: 29/Downstream/1871156
Nearby gene
MIR3672(+57228) ;
Upstream sequence
gctgttagcaggtcactattccttgctgactactggttggaggtgtctcagttccttggcacacgggcctctaaagggcagctcacaagatggcggctga
Downstream sequence
cttccctcagacagagccaatgagagaatgctaacaacaatggaaatcccagtcttttgtaacctaatgatgacagtgaaatacgataatttttgtcata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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