Basic Information
VIS ID
TVIS44021561
Fusion event
HTLV-1-FIRRE integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
130938963/131804935 (Hg38)
End
130938963/131804935 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
FIRRE
Nearest miRNA
hsa-let-7f-2/Upstream/10433882; hsa-mir-105-1/Downstream/2364443;
Nearest TSS
ENST00000429181/Upstream/49269; ENST00000496850/Downstream/25708;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/8780, chrX-CpG: 80/Downstream/217855
Upstream sequence
GGACGAAATACAAAATTCTCCTTAAAAGTGTCAAAGAATTCACAAAAGAGAAAGTCTCAGATTAAAACTCTAATAGAGAGAATTAACGGGAACACCAGAT
Downstream sequence
TACCCAGTCTTTTTGGCCTTTTGGGTATTTGCTTACCTGGGTAGTATTGGCCTTCATTTTCAGGGACCTCACAGGTGGCAAAGAGCagaagatagaaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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