Basic Information
VIS ID
TVIS44021588
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
35841375/35823258 (Hg38)
End
35841375/35823258 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-23c/Upstream/3181699; hsa-let-7f-2/Downstream/2200637;
Nearest TSS
ENST00000429181/Upstream/24467; ENST00000297866/Downstream/96476;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/197058, chrX-CpG: 90/Downstream/1134174
Nearby gene
MAGEB16(+19523) ;
Upstream sequence
gtgcaatggcgccatctcggctcaccacaacctctgccttccaggttcaagcagttctcctgcctcagcctcccaagtagctgggattacaggcatatgc
Downstream sequence
caccatgcctggctaattttgtgtttttggtagagacggggtttctccatgttggtcaggctggtcttgaactcctgacctcaggtgatccacccgcctt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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