VISDB Viral Integration Site DataBase

VIS ID

TVIS44021604

Fusion event

HTLV-1-MSN integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

q12

Reference genome

Start

End

64892320/65672459 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-200c-3p ; hsa-mir-133a-3p ; hsa-mir-124-3p ; hsa-mir-215-5p ; hsa-mir-615-3p ; hsa-let-7b-5p ; hsa-mir-200b-3p ; hsa-mir-6746-5p ; hsa-mir-30b-3p ; hsa-mir-6772-3p ; hsa-mir-3691-5p ; hsa-mir-3165 ; hsa-mir-3689d ; hsa-mir-6851-5p ; hsa-mir-4448 ; hsa-mir-4268 ; hsa-mir-6134 ; hsa-mir-4524a-3p ; hsa-mir-6770-5p ; hsa-mir-92a-2-5p ; hsa-mir-6748-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-4489 ; hsa-mir-4795-5p ; hsa-mir-664b-5p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-7113-5p ; hsa-mir-9500 ; hsa-mir-6824-5p ; hsa-mir-4536-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6731-5p ; hsa-mir-8085 ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-6783-5p ; hsa-mir-4779 ; hsa-mir-122-5p ; hsa-mir-1226-5p ; hsa-mir-1321 ; hsa-mir-144-3p ; hsa-mir-1914-3p ; hsa-mir-2467-5p ; hsa-mir-3126-5p ; hsa-mir-3144-5p ; hsa-mir-3148 ; hsa-mir-3151-5p ; hsa-mir-3191-3p ; hsa-mir-338-3p ; hsa-mir-4419a ; hsa-mir-4424 ; hsa-mir-4433b-3p ; hsa-mir-4435 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4510 ; hsa-mir-4530 ; hsa-mir-4534 ; hsa-mir-4652-5p ; hsa-mir-4716-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-5194 ; hsa-mir-574-5p ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-615-5p ; hsa-mir-625-5p ; hsa-mir-651-3p ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6742-5p ; hsa-mir-6794-5p ; hsa-mir-6796-5p ; hsa-mir-6798-5p ; hsa-mir-6800-5p ; hsa-mir-6802-5p ; hsa-mir-6810-5p ; hsa-mir-6822-3p ; hsa-mir-6830-5p ; hsa-mir-6834-5p ; hsa-mir-6875-5p ; hsa-mir-7106-5p ; hsa-mir-765 ; hsa-mir-766-3p ; hsa-mir-8065 ; hsa-mir-2115-5p ; hsa-mir-3185 ; hsa-mir-345-3p ; hsa-mir-4725-5p

Nearest miRNA

hsa-let-7f-2/Upstream/1886372; hsa-mir-105-1/Downstream/346411;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/4489, chrX-CpG: 45/Downstream/149595

Upstream sequence

ATTACTTTGCTTGCAAAAAGGAAAAAACAGGGTACAGATGTGGTCTCCTTTGGGATAGTCTGTTGGTTCAAGTGAAGGGGGTGGTCTTTTCATGACTGAC

Downstream sequence

TGGCTTTGCTGTCCATCCCTCCTTCCATTTCATGCTTGAGAGAGCTGAAAAACTTTTCAATTCCAGGTTCTAATCTGTGGTATAGAAGTTGTCACTTTGG