Basic Information
VIS ID
TVIS44021662
Fusion event
HTLV-1-HAO2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p12
Reference genome
GRCh37/hg19
Start
119910711/119368088 (Hg38)
End
119910711/119368088 (Hg38)
Orient
-
Location type
Intronic
Target gene
HAO2
Nearest miRNA
hsa-mir-101-1/Upstream/2273360; hsa-mir-1182/Downstream/26482499;
Nearest TSS
ENST00000473358/Upstream/39836; ENST00000457318/Downstream/691;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/40176, chr1-CpG: 134/Downstream/254591
Nearby gene
HAO2(+688) ;
Upstream sequence
tgaaaagattgaccttccgtgaagatcaaatgaagtaatgcgtgtagtgtgtctggcacgtcgtaagcgcATCACACACGTGAGCTGTGGCAATACTAAG
Downstream sequence
GAGCAGTGGCAAGAGCTGGGGGAGGAGTGGAGACGAACAGACCTGGACAAATTAGTGACCTTTCTGGGACCCCTACAGAACTCTTCTGGAGAAATTAATT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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