Basic Information
VIS ID
TVIS44021665
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
121252643/121510845 (Hg38)
End
121252643/121510845 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/4416117; hsa-mir-1182/Downstream/24339742;
Nearest TSS
ENST00000473358/Upstream/462; ENST00000443018/Downstream/7984;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/113648, chr1-CpG: 75/Downstream/8214
Nearby gene
EMBP1(+8267) ;
Upstream sequence
gggttatgtcccctttaagctgtagggggaggggaatttggcccaacctgggtacatgtccccttctccctctgatttaaagcagatcaaggcacacctg
Downstream sequence
gggaagttttcagatgatcctgataggtatatagatgtcctacagggtctagggcaaatctttgatctcacttggagagatgtcatgctattagatcaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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