Basic Information
VIS ID
TVIS44021666
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
GRCh37/hg19
Start
12226878/12166821 (Hg38)
End
12226878/12166821 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1A
Nearest miRNA
hsa-mir-12136/Upstream/137599; hsa-mir-101-1/Downstream/122;
Nearest TSS
ENST00000473358/Upstream/40887; ENST00000536782/Downstream/182;
Nearest CpG islands
chr1-CpG: 95/Target, None/Upstream, None/Downstream
Nearby gene
MIR7846(No orient, 122)
Upstream sequence
GCTGGGAGGGCAGGTGGAGGCCGGGCAGGTGGAGGCCGGGCAGGTGGAGATGGTGATTCGAAGAGGAGGGGACGATAGGAGGAGGTTGAGGGGTCACCCG
Downstream sequence
AGTGCTGGGAGTGACGCTGGAGGTATCGGCCCAGCGATGCTGGAGTGGTCGGGTCGGAGGCCCAGCAGCGTCTGGGGAGGGGCGTGGGGGAGGCGTGTCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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