VISDB Viral Integration Site DataBase

VIS ID

TVIS44021676

Fusion event

HTLV-1-ASH1L integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q22

Reference genome

Start

End

155423326/155453535 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-625-5p ; hsa-mir-193b-3p ; hsa-mir-361-5p ; hsa-mir-185-5p ; hsa-mir-17-5p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-214-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-548t-3p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-6864-5p ; hsa-mir-4696 ; hsa-mir-3179 ; hsa-mir-154-5p ; hsa-mir-302f ; hsa-mir-5692a ; hsa-mir-6083 ; hsa-mir-374b-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3140-3p ; hsa-mir-4729 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-656-3p ; hsa-mir-646 ; hsa-mir-651-3p ; hsa-mir-503-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-6838-5p ; hsa-mir-107 ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-718 ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-138-2-3p ; hsa-mir-574-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-627-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-183-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-377-3p ; hsa-mir-3650 ; hsa-mir-3665 ; hsa-mir-3934-5p ; hsa-mir-4705

Nearest miRNA

hsa-mir-101-1/Upstream/107090; hsa-mir-1182/Downstream/497738;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/127893, chr1-CpG: 95/Downstream/108960

Upstream sequence

GACCTAATTCTCATTCCATACCGTCATAATAATGGCAGGAGGGCCAACGGTAGCAACAGTaacaacagaagttaccatttatggctgggtgcagtggctc

Downstream sequence

acgcctctaatctcagcactttgggaagccaaggcaggtggatcacctgaggtcaggagttcaaaaccagcctggccaacatagtgaaaccccatctcta