Basic Information
VIS ID
TVIS44021689
Fusion event
HTLV-1-KIFAP3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
169892971/169923830 (Hg38)
End
169892971/169923830 (Hg38)
Orient
-
Location type
Intronic
Target gene
KIFAP3
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-671-3p ; hsa-mir-425-5p
Nearest miRNA
hsa-mir-101-1/Upstream/1548209; hsa-mir-1182/Downstream/227548;
Nearest TSS
ENST00000473358/Upstream/29563; ENST00000440321/Downstream/100247;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/30014, chr1-CpG: 30/Downstream/150639
Upstream sequence
gacttgttagcaatatcactgtaattctacctaaaagaagatggtcctcagaagggagttcaccagtcattggcacagaacaaggagcgtctcagctaca
Downstream sequence
acgctggttgtagcaacctaggcaattgcgtggtgatctggtaagctataacaccataaggaatatctggcctttttgcagtttggtcctcaatcaggaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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