Basic Information
VIS ID
TVIS44021705
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
195817748/195848618 (Hg38)
End
195817748/195848618 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/2712035; hsa-mir-1182/Downstream/733795;
Nearest TSS
ENST00000473358/Upstream/1497675; ENST00000496761/Downstream/212455;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2726524, chr1-CpG: 24/Downstream/759960
Upstream sequence
ggcaggaaccggccatctggatgtgtacgtgcaggtcacaggggatatgatggcttagcttgggttcagaggccggacaCAAGGTaatgagtaagcaaat
Downstream sequence
catatatgttcagatagtgactgacaagtgttatcaagaaaatgaaatagatgtgagtgatcgagaaagttggtggttgaggaatgtacactagtggggt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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