Basic Information
VIS ID
TVIS44021709
Fusion event
HTLV-1-LOC107985246 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
201479352/201510224 (Hg38)
End
201479352/201510224 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107985246
Nearest miRNA
hsa-mir-101-1/Upstream/2651071; hsa-mir-1182/Downstream/209284;
Nearest TSS
ENST00000473358/Upstream/768; ENST00000593583/Downstream/112661;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2836, chr1-CpG: 110/Downstream/28427
Nearby gene
CSRP1(-2965) ;
Upstream sequence
tcattcattcacccatccatccatttgttcatccatctgtctctccatccatccatccctccctccatccatccatccatccatccgtccatccacctgt
Downstream sequence
tcatccatgtatccatccaACcattcactcagaagacatttattggggccccactctgtgctggtctctaggttctgggaatacaaggaagcctataatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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