VISDB Viral Integration Site DataBase

VIS ID

TVIS44021749

Fusion event

HTLV-1-IFNLR1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p36.11

Reference genome

Start

End

24485847/24159357 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-7847-3p ; hsa-mir-6880-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6499-3p ; hsa-mir-508-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-6857-5p ; hsa-mir-5186 ; hsa-mir-151a-3p ; hsa-mir-379-5p ; hsa-mir-3529-5p ; hsa-mir-4650-3p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-5187-5p ; hsa-mir-4450 ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-4533 ; hsa-mir-98-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-6804-5p ; hsa-mir-1827 ; hsa-mir-4524a-3p ; hsa-mir-1252-5p ; hsa-mir-8089 ; hsa-mir-4700-5p ; hsa-mir-4667-5p ; hsa-mir-6831-5p ; hsa-mir-6755-5p ; hsa-mir-3927-3p ; hsa-mir-449c-5p ; hsa-mir-2682-5p ; hsa-mir-34b-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-4463 ; hsa-mir-4499 ; hsa-mir-3154 ; hsa-mir-6891-5p ; hsa-mir-3173-3p ; hsa-mir-4314 ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-6090 ; hsa-mir-6827-5p ; hsa-mir-6506-5p ; hsa-mir-3182 ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-1236-3p ; hsa-mir-665 ; hsa-mir-4496 ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-4662a-5p ; hsa-mir-3926 ; hsa-mir-3190-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6849-3p ; hsa-mir-3613-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6771-3p ; hsa-mir-548c-3p ; hsa-mir-106a-3p ; hsa-mir-210-5p ; hsa-mir-4749-3p ; hsa-mir-1470 ; hsa-mir-6887-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-1254 ; hsa-mir-1277-3p ; hsa-mir-140-5p ; hsa-mir-1915-3p ; hsa-mir-1976 ; hsa-mir-205-3p ; hsa-mir-300 ; hsa-mir-3116 ; hsa-mir-3653-3p ; hsa-mir-3653-5p ; hsa-mir-3658 ; hsa-mir-3690 ; hsa-mir-381-3p ; hsa-mir-4254 ; hsa-mir-4426 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4531 ; hsa-mir-4534 ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-485-3p ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-505-5p ; hsa-mir-5191 ; hsa-mir-539-3p ; hsa-mir-5703 ; hsa-mir-6507-5p ; hsa-mir-6758-5p ; hsa-mir-6764-5p ; hsa-mir-6832-5p ; hsa-mir-6856-5p ; hsa-mir-6882-5p ; hsa-mir-8082 ; hsa-mir-1255b-2-3p ; hsa-mir-1273g-3p ; hsa-mir-224-3p ; hsa-mir-4793-3p ; hsa-mir-522-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-12136/Upstream/230210; hsa-mir-101-1/Downstream/759988;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/178830, chr1-CpG: 81/Downstream/27693

Upstream sequence

catacatgaccctatttaatcctcacaagaataaacccatcctgcagactgtgcaaaccaaggtttggggcattatgtaagctgcccaaagacacacaat

Downstream sequence

gagtgtggttttaatccaggcgagtctatctctaggctcatgttcttaaccactgtgtcacgaagctccCAAGGCCCAGAGGGAAAGTTTCTCTTTCTGC