Basic Information
VIS ID
TVIS44021767
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p35.2
Reference genome
GRCh37/hg19
Start
31920213/31447366 (Hg38)
End
31920213/31447366 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12136/Upstream/708134; hsa-mir-101-1/Downstream/311294;
Nearest TSS
ENST00000473358/Upstream/33553; ENST00000466998/Downstream/128207;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/33203, chr1-CpG: 37/Downstream/139504
Nearby gene
SERINC2(+12686) ;
Upstream sequence
aggagactcagtttcctgatctgtaaaatggcaatgatagtgcctttttcatTCCTTCattcattcatccactagcggtgcgtcacacacctattctata
Downstream sequence
gcaggccttgtttacacaaggatcagcagcagatgtcacacttgccattagggggctgagatctggtggaggaggtggacgtaaatccagtagccacaca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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