VISDB Viral Integration Site DataBase

VIS ID

TVIS44021779

Fusion event

HTLV-1-DLGAP3 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

35329689/34864088 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-92a-2-5p ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-3191-3p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-6503-3p ; hsa-mir-4698 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-4694-3p ; hsa-mir-5681b ; hsa-mir-513b-5p ; hsa-mir-4696 ; hsa-mir-2276-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3714 ; hsa-mir-6750-3p ; hsa-mir-4289 ; hsa-mir-4477a ; hsa-mir-496 ; hsa-mir-616-3p

Nearest miRNA

hsa-mir-12136/Upstream/194394; hsa-mir-101-1/Downstream/2297475;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/4139, chr1-CpG: 104/Downstream/1595

Nearby gene

DLGAP3(-1348) ;

Upstream sequence

ttggaccaggcccaggagtctgtatGGGATCACCTCCAAACGGACTGCTTTTGGGAATTCAGATCACATTAGAGTTCTCCTCACCTTCCAGGCTCATGTG

Downstream sequence

TGTACGTGGACCATCTCTTGCTTTTCCAAAGTTGTCTACCAAACCAGTCTATAAAACGTtcatgccactcctctgttcaaaacccttctatggctcccta